HsaEX0068972 @ hg19
Exon Skipping
Gene
ENSG00000144357 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:30467]
Coordinates
chr2:170785239-170799144:+
Coord C1 exon
chr2:170785239-170785378
Coord A exon
chr2:170789422-170789518
Coord C2 exon
chr2:170799003-170799144
Length
97 bp
Sequences
Splice sites
3' ss Seq
TACTTTCTTTTGAATAATAGCTG
3' ss Score
4.04
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
TCCAGAAAATCCTAATCCCAAAAGTGGCATTATTCCAGGCAGTTACAGCTTTGAATCAGTTTTATCAGCTGTAGCTGATTTTAAGGCTCCTGTTTTTGAACCTGGAGGTTCTATGCAACAAGGCATGTATACTCCCAAAG
Seq A exon
CTGAAGTCTGGGATCAAGAGTTTGACCCCGTCATGGTCATTCTTCGAACAGTTTACCGTAGAGATGTGCAGTCTGCAATGGACAGATATACTGCATT
Seq C2 exon
TTTAAAACAGAGTGGAAAATTTCCTGGAAATCCCTGGCCTCCATATAAGAAAAGGACATCACTCCATCCTAGCTATAAAGGTCTTATGAGACTTTTGCACTGTAAAACTTTACACATTGTGCTATTCACTCTGCTTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144357-'20-22,'20-21,21-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAAGTGGCATTATTCCAGGC
R:
TATGGAGGCCAGGGATTTCCA
Band lengths:
168-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)