RnoEX0096070 @ rn6
Exon Skipping
Gene
ENSRNOG00000008616 | Ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:RGD Symbol;Acc:1565257]
Coordinates
chr3:56196298-56209279:+
Coord C1 exon
chr3:56196298-56196437
Coord A exon
chr3:56199666-56199762
Coord C2 exon
chr3:56209138-56209279
Length
97 bp
Sequences
Splice sites
3' ss Seq
TGCTTTCTTCTGTCTGATAGCTG
3' ss Score
8.68
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
CCCAGAAAATCCCAACCCTAAAAGTGGCATTATTCCTGGAAGCTATAGCTTTGAATCAGTTTTATCTGCTGTAGCTGACTTTAAGGCTCCCGTTTTTGAACCTGGAGGCTCCATGCAACAAGGCATGTATACTCCCAAAG
Seq A exon
CTGAAGTCTGGGATCAGGAGTTTGATCCTGTCATGGTCATTCTTCGAACAGTTTATCGCCGAGATGTGCAGTCTGCCATGGACAGATACACAGCATT
Seq C2 exon
TTTAAAACAGAGTGGAAAATTTTCTGGAAATCCCTGGCCTCCTTATAAGAAAAGAACATCACTCCATCCCAGTTATAAAGGTCTCATGAGACTTCTGCATTGTAAAACCTTACACATTGTGCTGTTCACTCTGCTTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008616-'32-37,'32-31,33-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAACCCTAAAAGTGGCAT
R:
TAAGGAGGCCAGGGATTTCCA
Band lengths:
176-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]