BtaEX6009197 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027789 | PPIG
Description
Bos taurus peptidylprolyl isomerase G (cyclophilin G) (PPIG), mRNA. [Source:RefSeq mRNA;Acc:NM_001109807]
Coordinates
chr2:26700817-26709804:-
Coord C1 exon
chr2:26709775-26709804
Coord A exon
chr2:26709542-26709681
Coord C2 exon
chr2:26700817-26701030
Length
140 bp
Sequences
Splice sites
3' ss Seq
ATCTTTACTTGACTCTTTAGGCA
3' ss Score
7.78
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
AACAACAAAACCAACTCCTCATTTAGATGG
Seq A exon
GCATCATGTGGTTTTTGGGCAAGTGATTTCTGGTCAAGAAGTTGTGAGAGAAATAGAAAACCAGAAAACAGATGCAGCTAGCAAACCATTTGCTGAGGTACGGATACTCAGTTGTGGAGAGCTAGTTCCAAAAGCTAAAG
Seq C2 exon
CTAAGAAAGAAGAAAAGAAAAGGCATAAGTCATCTTCTTCCTCCTCCTCATCATCCAGTGACTCAGACAGCTCAAGCGATTCTCAGTCCTCTTCTGATTCTTCTGATTCTGAAAGTGCTTCTGAAGAGAAGTCAAAAAAAAGAAAGAAGAAACATAGGAAAAATTCTCGTAAACACAAGAAAGAGAAGAAGAAGCGAAAGAAAAGCAAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027789-'11-18,'11-13,13-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=0.604 C2=1.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(6.0=100)
A:
PF0016016=Pro_isomerase=PD(24.1=83.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAACAAAACCAACTCCTCATT
R:
TTTCTTGCTTTTCTTTCGCTTCT
Band lengths:
242-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]