GgaEX6042400 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr7:18120802-18126642:-
Coord C1 exon
chr7:18126613-18126642
Coord A exon
chr7:18126386-18126525
Coord C2 exon
chr7:18120802-18120996
Length
140 bp
Sequences
Splice sites
3' ss Seq
CTTTTGCTTAAATCCTTCAGACA
3' ss Score
5.18
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
AACTACTAAACCTACACCTCACTTAGATGG
Seq A exon
ACATCATGTCGTCTTTGGACAAGTCATCTCAGGTCAGGAAGTGGTGAGAGAAATAGAAAACCAGAAAACAGATGCATCTAGTAAACCATATGCTGAAGTACGCATACTGAGTTGTGGAGAGTTGATTCCAAAATCCAAAG
Seq C2 exon
CCAAGAAAGAAGACAAGAAAAGGCACAAGTCGTCTTCCTCATCCAGTGACTCGGAAAGTTCAAGTGATTCGGAATCATCTTCTGATTCATCATCGGATTCTGAGAGTGCTTCAGAAGAAAAATCTAAAAAGCGAAAAAAGAAACACAAGAAAAATTCCAAGAAACATAAGAAGGAAAAGAAAAAGAGAAAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009839-'17-16,'17-13,19-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=0.646 C2=1.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(6.0=100)
A:
PF0016016=Pro_isomerase=PD(24.1=83.3),PF074236=DUF1510=PU(31.6=89.6),PF105004=SR-25=PU(27.2=77.1)
C2:
PF074236=DUF1510=FE(47.8=100),PF105004=SR-25=FE(47.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTACTAAACCTACACCTCACTT
R:
TCTTTTCCTTCTTATGTTTCTTGGAA
Band lengths:
210-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]