MmuEX6101969 @ mm9
Exon Skipping
Gene
ENSMUSG00000042133 | Ppig
Description
peptidyl-prolyl isomerase G (cyclophilin G) [Source:MGI Symbol;Acc:MGI:2445173]
Coordinates
chr2:69573925-69579750:+
Coord C1 exon
chr2:69573925-69573954
Coord A exon
chr2:69574046-69574185
Coord C2 exon
chr2:69579543-69579750
Length
140 bp
Sequences
Splice sites
3' ss Seq
ATTTTTACATGACATTTTAGGCA
3' ss Score
5.97
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
AACAACAAAACCAACTCCTCATTTAGATGG
Seq A exon
GCATCATGTTGTTTTTGGGCAAGTGATCTCTGGTCAGGAAGTTGTGAGAGAGATTGAAAACCAGAAAACAGATGCCGCTAGCAAACCATTTGCTGAAGTTCGGATACTCAGTTGCGGAGAGCTGATTCCAAAGTCTAAGG
Seq C2 exon
TTAAGAAAGAAGAAAAGAAAAGGCATAAGTCCTCGTCCTCCTCCTCCTCCAGTGACTCAGACAGCTCAAGCGATTCTCAGTCCTCCTCTGAGTCTTCTGATTCTGAAAGCGCTTCCGAAGAAAAATCCAGAAAAAGGAAAAAGAAACATAGGAAAAATTCCCGAAAGCATAAGAAGGAGAAGAAGAAGCGAAAGAAAAGCAAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042133-'16-22,'16-20,17-22=AN
Average complexity
A_S
Mappability confidence:
89%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.529 A=0.521 C2=1.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=PD(0.9=33.3)
A:
PF0016016=Pro_isomerase=PD(24.1=83.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAACAAAACCAACTCCTCATT
R:
TCTTGCTTTTCTTTCGCTTCTTCT
Band lengths:
234-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: