DreEX6019941 @ danRer10
Exon Skipping
Gene
ENSDARG00000044431 | ppig
Description
peptidylprolyl isomerase G (cyclophilin G) [Source:ZFIN;Acc:ZDB-GENE-040426-2822]
Coordinates
chr6:3538005-3541578:+
Coord C1 exon
chr6:3538005-3538034
Coord A exon
chr6:3538125-3538264
Coord C2 exon
chr6:3541410-3541578
Length
140 bp
Sequences
Splice sites
3' ss Seq
TGTTATTTCTCCCTCTGCAGAAT
3' ss Score
11.52
5' ss Seq
AAGGTGAAC
5' ss Score
5.54
Exon sequences
Seq C1 exon
AACTACTAAACCAACTCCTCACTTGGACGG
Seq A exon
AATTCATGTGGTGTTTGGTCAGGTGATCACCGGCCAGGATGTGATCCGGATGATCGAGAGTCAGAAGACGGATACCAACAGCAGACCGTATGCAGAGGTCAAAGTGCTCAACTGTGGGGAACTTGTTCCAAAATCCAAAG
Seq C2 exon
CAAAGAAAGAAAAGAAGAAGCACCAGTCGTCCAGCGAGAGTGAGGACTCTTCTTCTGACAGCTCTTCAGACTCGGAGGAATCGGAGAAGGAGAAGAAACGACGCAAGAAACACAAGAAGGAACACAAGAAAAAGAAGGAATCGAAACACAAAAAGAAAGAGAAGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044431-'9-12,'9-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=0.708 C2=1.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(6.0=100)
A:
PF0016016=Pro_isomerase=PD(24.1=83.3),PF105004=SR-25=PU(27.2=64.6)
C2:
PF105004=SR-25=FE(49.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAAACCAACTCCTCACTTGGACG
R:
CCTTTCTTCTCTTTCTTTTTGTGTTT
Band lengths:
194-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]