BtaEX6009240 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004555 | LRP2
Description
low density lipoprotein receptor-related protein 2 [Source:HGNC Symbol;Acc:HGNC:6694]
Coordinates
chr2:27040067-27043416:+
Coord C1 exon
chr2:27040067-27040237
Coord A exon
chr2:27041713-27041939
Coord C2 exon
chr2:27043236-27043416
Length
227 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTCCTTTGATCCTAGGTT
3' ss Score
10.09
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GCACGTCTACTGGGCAGACTGGGGTGACCGAGCATACATTGGGAGAGTAGGCATGGATGGAACCCTTAAGTCTCTGATTATCTCTACCAAGATCATGTGGCCCAATGGCCTCACCATTGATTACACCAATGATCTACTCTACTGGGCAGATGCCCACCTGGGTTACATTGA
Seq A exon
GTTCTCTGATTTGGAGGGCCGCCATCGGCACACAGTATACGAAACTGGCACACTGTCTCACCCCTTTGCTATTACCATTTTTGAAGACACCATTTATTGGACAGATTGGAATACAAAGACAGTTGAGAAGGGAAACAAATACAATGGGTCAGATAGAGTGGCGCTGTTGAATGTAACACACAGGCCATATGACATCCGTGTCTATCATCCTTATAGGCAGCCAATTG
Seq C2 exon
TAGTGCCTAATCCCTGTGGTACGAACAACGGTGGCTGTTCTCATCTCTGCCTCATCAAAGAAGGAGGTGTTGGATTCACTTGCGAGTGTCCAGATAACTTCTACACCGTCCAGCGTGGTCCCAACACCCAGTGCCTGCCCATGTGCTCCAGCACCCAATTCCTGTGTGCCGACAGCGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004555-'64-59,'64-58,65-59=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=72.4),PF0005812=Ldl_recept_b=PU(31.0=22.4)
A:
PF0005812=Ldl_recept_b=PD(66.7=36.4)
C2:
PF146701=FXa_inhibition=WD(100=65.6),PF0005713=Ldl_recept_a=PU(35.9=23.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAGAGTAGGCATGGATGG
R:
CACAGGAATTGGGTGCTGGAG
Band lengths:
298-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]