GgaEX1033906 @ galGal4
Exon Skipping
Gene
ENSGALG00000010858 | LRP2
Description
low density lipoprotein receptor-related protein 2 [Source:HGNC Symbol;Acc:HGNC:6694]
Coordinates
chr7:18313337-18321299:+
Coord C1 exon
chr7:18313337-18313507
Coord A exon
chr7:18314760-18314983
Coord C2 exon
chr7:18321183-18321299
Length
224 bp
Sequences
Splice sites
3' ss Seq
GTGCATTTTTCTTTATCTAGGTA
3' ss Score
9.25
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
ACAGGTTTACTGGACAGACTGGGCAGATCGAGCTTATATTGGACGAGCAGGCATGGATGGCAAGGAGAAGATGGTGATTATCTCTACAAAGTTAGAGTGGCCCAATGGACTCACCATAGATTACACCAACGACAAGCTCTACTGGGCAGATGCCCATCTAAATTACATTGA
Seq A exon
GTACTCTGACCTGGATGGACATCATCGTCATACCGTATATGATGGGACATTGCCTCACCCATTTGCAATAACAATTTTTGAAGACACAATATATTGGACTGATTGGAACACAAGAACTGTTGAAAAGGGAAATAAATATGATGGATCAGGCAGGACTGTTCTTGTGAACACCACACATAGGCCATTTGACATCCATGTTTACCATCCGTACAGGCAACCTTTTG
Seq C2 exon
AGCTGAGGACCTGCCACCCAGGTTATTTCCAGTGTAATAGTGGACACTGCGTTGCAGAGCGCTTCAGATGTGATGGAAATGCGGACTGCCTTGATTTCTCTGATGAAATAACTTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010858_MULTIEX1-14/29=13-21
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=72.4),PF0005812=Ldl_recept_b=PU(31.7=22.4)
A:
PF0005812=Ldl_recept_b=PD(65.9=35.5)
C2:
PF0005713=Ldl_recept_a=WD(100=92.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTTTACTGGACAGACTGGG
R:
TCATCAGAGAAATCAAGGCAGTCC
Band lengths:
276-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]