GgaEX1033906 @ galGal3
Exon Skipping
Gene
ENSGALG00000010858 | LRP2
Description
NA
Coordinates
chr7:20278680-20280922:+
Coord C1 exon
chr7:20278680-20278850
Coord A exon
chr7:20280103-20280326
Coord C2 exon
chr7:20280745-20280922
Length
224 bp
Sequences
Splice sites
3' ss Seq
GTGCATTTTTCTTTATCTAGGTA
3' ss Score
9.25
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
ACAGGTTTACTGGACAGACTGGGCAGATCGAGCTTATATTGGACGAGCAGGCATGGATGGCAAGGAGAAGATGGTGATTATCTCTACAAAGTTAGAGTGGCCCAATGGACTCACCATAGATTACACCAACGACAAGCTCTACTGGGCAGATGCCCATCTAAATTACATTGA
Seq A exon
GTACTCTGACCTGGATGGACATCATCGTCATACCGTATATGATGGGACATTGCCTCACCCATTTGCAATAACAATTTTTGAAGACACAATATATTGGACTGATTGGAACACAAGAACTGTTGAAAAGGGAAATAAATATGATGGATCAGGCAGGACTGTTCTTGTGAACACCACACATAGGCCATTTGACATCCATGTTTACCATCCGTACAGGCAACCTTTTG
Seq C2 exon
TTAATAATCCTTGTGGCACCAACAATGGTGGTTGTTCTCATCTGTGTCTCATAAAAGCTGGTGGTCAGGGTTATTCCTGCGAATGTCCCGATAACTTCATGATTGTACAGTTTGGCAGTACAGCACACTGCCTTCCAATGTGCTCCAGCACCCAGTTCCTCTGTGCAGACACTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010858-'56-59,'56-58,57-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=72.4),PF0005812=Ldl_recept_b=PU(31.7=22.4)
A:
PF0005812=Ldl_recept_b=PD(65.9=35.5),PF0005812=Ldl_recept_b=WD(100=53.9)
C2:
PF146701=FXa_inhibition=WD(100=61.7),PF0005713=Ldl_recept_a=PU(35.9=23.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTGGGCAGATCGAGCTTA
R:
GAGCACATTGGAAGGCAGTGT
Band lengths:
301-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]