MmuEX6101929 @ mm10
Exon Skipping
Gene
ENSMUSG00000027070 | Lrp2
Description
low density lipoprotein receptor-related protein 2 [Source:MGI Symbol;Acc:MGI:95794]
Coordinates
chr2:69461257-69465759:-
Coord C1 exon
chr2:69465589-69465759
Coord A exon
chr2:69464574-69464797
Coord C2 exon
chr2:69461257-69461434
Length
224 bp
Sequences
Splice sites
3' ss Seq
GCTTTTCTTTCTACCACCAGGTT
3' ss Score
10.27
5' ss Seq
TTAGTGAGT
5' ss Score
5.79
Exon sequences
Seq C1 exon
GTATGTCTACTGGGCAGATTGGGGTGATCATGCATACATTGCAAGAATTGGCATGGATGGAACCAATAAGACTGTGATTATCTCTACCAAGATCGAATGGCCCAATGCCATCACCATTGACTACACCAATGATCTCTTGTACTGGGCAGATGCTCACCTGGGTTACATCGA
Seq A exon
GTTCTCTGATTTGGAGGGTCACCATCGACACACAGTGTATGACGGAACACTGCCCCACCCCTTTGCTCTCACCATTTTTGAAGACACTGTTTTTTGGACAGATTGGAATACACGGACAGTTGAAAAGGGAAACAAATATGATGGATCAGGGCGAGTCGTGCTGGTGAACACAACCCACAAACCCTTTGACATCCACGTGTTACATCCATACCGGCAGCCGATTA
Seq C2 exon
TGAGCAATCCCTGTGCTACCAACAACGGTGGCTGTTCTCACCTGTGCCTCATCAAAGCAGGAGGGAGAGGATTCACCTGCGAGTGTCCCGATGACTTCCAGACCGTTCAGCTTCGAGACAGGACACTCTGTATGCCCATGTGCTCCAGCACGCAGTTCCTGTGTGGCAACAATGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027070-'64-63,'64-62,65-63=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=72.4),PF0005812=Ldl_recept_b=PU(31.7=22.4)
A:
PF0005812=Ldl_recept_b=PD(65.9=35.5)
C2:
PF146701=FXa_inhibition=WD(100=66.7),PF0005713=Ldl_recept_a=PU(35.9=23.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATTGGGGTGATCATGCA
R:
CTGGAGCACATGGGCATACAG
Band lengths:
306-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types