DreEX6038535 @ danRer10
Exon Skipping
Gene
ENSDARG00000102506 | lrp2a
Description
low density lipoprotein receptor-related protein 2a [Source:ZFIN;Acc:ZDB-GENE-050119-2]
Coordinates
chr9:48915767-48922317:+
Coord C1 exon
chr9:48915767-48915937
Coord A exon
chr9:48917291-48917514
Coord C2 exon
chr9:48922140-48922317
Length
224 bp
Sequences
Splice sites
3' ss Seq
AACTCTCTCTGTGTCCTTAGGTT
3' ss Score
11.67
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GTATGTGTACTGGACTGACTGGGGAGAAAGAGCGTTCATTGGTCGTGTTGGAATGGATGGAAATAACAAGTCTGCCATCATCACTACCAAGATCGAGTGGCCAAATGGTCTGACCATCGACTACACCAACGACAAACTCTACTGGTCTGATGCTCATCTCAACTACATTGA
Seq A exon
GTTCTCAGATCTGGATGGGCGTCACAGACACACAGTGTATGATGGTGTTCTGCCTCATCCGTTTGCCATCACAGTTTTCGAGGACACCCTTTACTGGACTGACTGGAACACTCGAACGGTGGAGAAGGGCAACAAATACAATGGCTCTGGACGTGAGATGCTGGTCAACACCACACACCGACCTTTCGACATCCACGTATGTCACCCTTACCGTCAGCCTATAG
Seq C2 exon
TGACGAACCCTTGTGCACTTAATAATGGAGGCTGTTCTCACCTGTGTCTCCTGCGGGCTGGAGGTCAGGGGTACACCTGCGAGTGTCCGGATCACTTCCTGACGGTGCAGATCGCCGGTGTTGCGCGCTGTTTACCCATGTGCTCAAGCACACAGTACAGATGCGCAGACAATGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102506-'55-64,'55-61,56-64=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=72.4),PF0005812=Ldl_recept_b=PU(31.7=22.4)
A:
PF0005812=Ldl_recept_b=PD(65.9=35.5)
C2:
PF146701=FXa_inhibition=WD(100=60.0),PF0005713=Ldl_recept_a=PU(35.9=23.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGGGGAGAAAGAGCGTTC
R:
TGAGCACATGGGTAAACAGCG
Band lengths:
301-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]