BtaEX6009241 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004555 | LRP2
Description
low density lipoprotein receptor-related protein 2 [Source:HGNC Symbol;Acc:HGNC:6694]
Coordinates
chr2:27039417-27041939:+
Coord C1 exon
chr2:27039417-27039569
Coord A exon
chr2:27040067-27040237
Coord C2 exon
chr2:27041713-27041939
Length
171 bp
Sequences
Splice sites
3' ss Seq
TGTTGTGTTTGCTCCAACAGGCA
3' ss Score
10.21
5' ss Seq
TGAGTACGT
5' ss Score
4.8
Exon sequences
Seq C1 exon
AAAGCTCTATTGGGTGGATTCCTACCTGAATTGCCTTTCTGTCTCTGACCTCAATGGTCGATACCGCCGCAAGTTGGCTGAGCACTGTGTGGATGCCAACAACACCTTCTGCTTTGAGAATCCTAGAGGACTTGCACTTCACCCTCGATATGG
Seq A exon
GCACGTCTACTGGGCAGACTGGGGTGACCGAGCATACATTGGGAGAGTAGGCATGGATGGAACCCTTAAGTCTCTGATTATCTCTACCAAGATCATGTGGCCCAATGGCCTCACCATTGATTACACCAATGATCTACTCTACTGGGCAGATGCCCACCTGGGTTACATTGA
Seq C2 exon
GTTCTCTGATTTGGAGGGCCGCCATCGGCACACAGTATACGAAACTGGCACACTGTCTCACCCCTTTGCTATTACCATTTTTGAAGACACCATTTATTGGACAGATTGGAATACAAAGACAGTTGAGAAGGGAAACAAATACAATGGGTCAGATAGAGTGGCGCTGTTGAATGTAACACACAGGCCATATGACATCCGTGTCTATCATCCTTATAGGCAGCCAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004555-'61-58,'61-57,64-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=94.2),PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
PF0005812=Ldl_recept_b=WD(100=72.4),PF0005812=Ldl_recept_b=PU(31.0=22.4)
C2:
PF0005812=Ldl_recept_b=PD(66.7=36.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAACAACACCTTCTGCTT
R:
CGGATGTCATATGGCCTGTGT
Band lengths:
258-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]