RnoEX6017287 @ rn6
Exon Skipping
Gene
ENSRNOG00000056184 | Lrp2
Description
LDL receptor related protein 2 [Source:RGD Symbol;Acc:68407]
Coordinates
chr3:55704731-55706526:-
Coord C1 exon
chr3:55706374-55706526
Coord A exon
chr3:55705778-55705948
Coord C2 exon
chr3:55704731-55704954
Length
171 bp
Sequences
Splice sites
3' ss Seq
TTCTGTGTTTGCTCCCACAGGCA
3' ss Score
11.65
5' ss Seq
CGAGTATGT
5' ss Score
6.61
Exon sequences
Seq C1 exon
AAAACTCTATTGGTTGGATGCCATCTTGGACTGCCTGTTTGTCTCTGACCTTGAAGGTCGACACCGCAAAATGATAGCCCAGCACTGTGTGGATGCTAACAATACCTTCTGCTTTGAACATCCCAGGGGAATTGTCCTTCATCCTCAAAGAGG
Seq A exon
GCATGTCTACTGGGCAGATTGGGGTGTTCACGCATACATTGGAAGGATTGGCATGGATGGAACCAATAAGTCTGTGATCATCTCTACCAAGATAGAATGGCCCAATGCCATCACCATTGACTACACCAACGATCTCTTGTACTGGGCAGATGCTCACCTGGGTTATATCGA
Seq C2 exon
GTTCTCTGATTTGGAAGGTCACCACCGACACACGGTGTACGATGGATCACTGCCTCACCCCTTTGCTCTTACGATTTTTGAAGACACTGTTTTTTGGACAGATTGGAATACACGGACGGTTGAAAAGGGAAACAAATATGATGGGTCAGGTCGAGTGGTGCTGGTGAACACAACGCACAAACCCTTCGACATCCACGTGTACCATCCATACCGGCAGCCGATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056184-'64-73,'64-72,65-73=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=94.2),PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
PF0005812=Ldl_recept_b=WD(100=72.4),PF0005812=Ldl_recept_b=PU(31.7=22.4)
C2:
PF0005812=Ldl_recept_b=PD(65.9=35.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTTTGAACATCCCAGGGG
R:
CGTGGATGTCGAAGGGTTTGT
Band lengths:
242-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]