GgaEX1033905 @ galGal4
Exon Skipping
Gene
ENSGALG00000010858 | LRP2
Description
low density lipoprotein receptor-related protein 2 [Source:HGNC Symbol;Acc:HGNC:6694]
Coordinates
chr7:18312700-18321299:+
Coord C1 exon
chr7:18312700-18312852
Coord A exon
chr7:18313337-18313507
Coord C2 exon
chr7:18321183-18321299
Length
171 bp
Sequences
Splice sites
3' ss Seq
AGGCATGTTTCTTTGAACAGACA
3' ss Score
5.18
5' ss Seq
TGAGTACGT
5' ss Score
4.8
Exon sequences
Seq C1 exon
AAAATTGTACTGGGTGGATGCCTACAAAGATTGCATCTATGTCTCTGAACTTGATGGAAGATTCCAGAAAAAACTAGTGGATCGGTGTGTGGATATCAACAACACTTACTGCTTTCAGCATCCCAGAGCAATTGTTGTTCATCCAAAATACGG
Seq A exon
ACAGGTTTACTGGACAGACTGGGCAGATCGAGCTTATATTGGACGAGCAGGCATGGATGGCAAGGAGAAGATGGTGATTATCTCTACAAAGTTAGAGTGGCCCAATGGACTCACCATAGATTACACCAACGACAAGCTCTACTGGGCAGATGCCCATCTAAATTACATTGA
Seq C2 exon
AGCTGAGGACCTGCCACCCAGGTTATTTCCAGTGTAATAGTGGACACTGCGTTGCAGAGCGCTTCAGATGTGATGGAAATGCGGACTGCCTTGATTTCTCTGATGAAATAACTTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010858_MULTIEX1-13/29=12-21
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=94.2),PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
PF0005812=Ldl_recept_b=WD(100=72.4),PF0005812=Ldl_recept_b=PU(31.7=22.4)
C2:
PF0005713=Ldl_recept_a=WD(100=92.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACTGGGTGGATGCCTACA
R:
GAGAAATCAAGGCAGTCCGCA
Band lengths:
248-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]