GgaEX1033905 @ galGal3
Exon Skipping
Gene
ENSGALG00000010858 | LRP2
Description
NA
Coordinates
chr7:20278043-20280326:+
Coord C1 exon
chr7:20278043-20278195
Coord A exon
chr7:20278680-20278850
Coord C2 exon
chr7:20280103-20280326
Length
171 bp
Sequences
Splice sites
3' ss Seq
AGGCATGTTTCTTTGAACAGACA
3' ss Score
5.18
5' ss Seq
TGAGTACGT
5' ss Score
4.8
Exon sequences
Seq C1 exon
AAAATTGTACTGGGTGGATGCCTACAAAGATTGCATCTATGTCTCTGAACTTGATGGAAGATTCCAGAAAAAACTAGTGGATCGGTGTGTGGATATCAACAACACTTACTGCTTTCAGCATCCCAGAGCAATTGTTGTTCATCCAAAATACGG
Seq A exon
ACAGGTTTACTGGACAGACTGGGCAGATCGAGCTTATATTGGACGAGCAGGCATGGATGGCAAGGAGAAGATGGTGATTATCTCTACAAAGTTAGAGTGGCCCAATGGACTCACCATAGATTACACCAACGACAAGCTCTACTGGGCAGATGCCCATCTAAATTACATTGA
Seq C2 exon
GTACTCTGACCTGGATGGACATCATCGTCATACCGTATATGATGGGACATTGCCTCACCCATTTGCAATAACAATTTTTGAAGACACAATATATTGGACTGATTGGAACACAAGAACTGTTGAAAAGGGAAATAAATATGATGGATCAGGCAGGACTGTTCTTGTGAACACCACACATAGGCCATTTGACATCCATGTTTACCATCCGTACAGGCAACCTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010858-'55-58,'55-56,56-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=94.2),PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
PF0005812=Ldl_recept_b=WD(100=72.4),PF0005812=Ldl_recept_b=PU(31.7=22.4)
C2:
PF0005812=Ldl_recept_b=PD(65.9=35.5),PF0005812=Ldl_recept_b=WD(100=53.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAGTGGATCGGTGTGTGGA
R:
AGAACAGTCCTGCCTGATCCA
Band lengths:
243-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]