DreEX6038536 @ danRer10
Exon Skipping
Gene
ENSDARG00000102506 | lrp2a
Description
low density lipoprotein receptor-related protein 2a [Source:ZFIN;Acc:ZDB-GENE-050119-2]
Coordinates
chr9:48911257-48917514:+
Coord C1 exon
chr9:48911257-48911923
Coord A exon
chr9:48915767-48915937
Coord C2 exon
chr9:48917291-48917514
Length
171 bp
Sequences
Splice sites
3' ss Seq
CTTATGTCCTATTTGTGCAGGTA
3' ss Score
8.67
5' ss Seq
TGAGTAAGA
5' ss Score
5.11
Exon sequences
Seq C1 exon
GTCTGCGAAAACACCCTGGGCTCATACGTCTGCAAATGTGCTCCGGGATTCCTCCGTGAACCAGATGGTCACAGCTGCAGACAAAACAGCAACATCCACCCGTATTTAATCTTTAGCAACCGCTACTACCTGCGCAATCTGTCCACGGACGGAGAGGCCTATTCGCTCATCCTGCAGGGTCTGAGTAGCGTGGTGGCTCTGGATTTCGACCGCGTGGATAAACGCTTGTATTGGATCGATGTGAGCCGCAGAGTGCTGGAGCGAATGTTTTTTAACGGGACAGGCCGGGAGGCGGTGGTCAATGGGGTTTTGCATGGTGAAGGGCTGGCGGTCGACTGGATTGGGAGGAAGCTTTATTGGGTGGACAGTTTTCTGGATTGTCTGAAAGTGTCAGAGCTGGACGGACGCTTCGTGAGGAAGTTAGCTGAACACTGCGTCGATGATAATCACACATACTGCTTCCAAAATCCCAGAGCCGTCGTGCTGCATCCCAAATTTGG
Seq A exon
GTATGTGTACTGGACTGACTGGGGAGAAAGAGCGTTCATTGGTCGTGTTGGAATGGATGGAAATAACAAGTCTGCCATCATCACTACCAAGATCGAGTGGCCAAATGGTCTGACCATCGACTACACCAACGACAAACTCTACTGGTCTGATGCTCATCTCAACTACATTGA
Seq C2 exon
GTTCTCAGATCTGGATGGGCGTCACAGACACACAGTGTATGATGGTGTTCTGCCTCATCCGTTTGCCATCACAGTTTTCGAGGACACCCTTTACTGGACTGACTGGAACACTCGAACGGTGGAGAAGGGCAACAAATACAATGGCTCTGGACGTGAGATGCTGGTCAACACCACACACCGACCTTTCGACATCCACGTATGTCACCCTTACCGTCAGCCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102506-'54-61,'54-60,55-61=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF126622=cEGF=WD(100=10.8),PF146701=FXa_inhibition=WD(100=16.1),PF0005812=Ldl_recept_b=WD(100=22.0),PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
PF0005812=Ldl_recept_b=WD(100=72.4),PF0005812=Ldl_recept_b=PU(31.7=22.4)
C2:
PF0005812=Ldl_recept_b=PD(65.9=35.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTAGCTGAACACTGCGTCG
R:
GTGTTGACCAGCATCTCACGT
Band lengths:
253-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]