BtaEX6009242 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004555 | LRP2
Description
low density lipoprotein receptor-related protein 2 [Source:HGNC Symbol;Acc:HGNC:6694]
Coordinates
chr2:27036183-27040237:+
Coord C1 exon
chr2:27036183-27036699
Coord A exon
chr2:27039417-27039569
Coord C2 exon
chr2:27040067-27040237
Length
153 bp
Sequences
Splice sites
3' ss Seq
TCCTGCTTCTCCATCTGCAGAAA
3' ss Score
10.26
5' ss Seq
TGGGTATTG
5' ss Score
2.85
Exon sequences
Seq C1 exon
GACCCTACACTCAGTGGTTGTAACCAAAACTGCACAGACACCTTAACCAGTTTCTATTGTTCTTGTAACCCTGGTTACAAGCTGTTGTCTGACAAGAGGACTTGTGTTGATATTGATGAATGCGAGGAGACGCCCTTCGTCTGTAGCCAAAAGTGTGAGAACTTACCTGGCACTTACATCTGCAAATGTGCCCCAGGCTACATCCGTGAGCCAGATGGAAAGACCTGCCGGCAGAACAGCAACATCGAGCCTGATCTCATTTTTAGCAACCGTTACTATTTGAGAAATCTAACTGTCTATGGCCATTTATACTCCCTCATCTTGCAAGGACTGGGTAATGTTGTGGCATTGGATTTTGACCGAGTAGAAAAGAGATTGTACTGGCTTGATATAGAGAATAAAGTCATTGAGAGAATGTTTGTGAATACGACAAACAGGGAGACAGTCTTAAAGTACAATCTACCTGGTGCGGAAAGTCTGGCTGTCGACTGGGTTACCAG
Seq A exon
AAAGCTCTATTGGGTGGATTCCTACCTGAATTGCCTTTCTGTCTCTGACCTCAATGGTCGATACCGCCGCAAGTTGGCTGAGCACTGTGTGGATGCCAACAACACCTTCTGCTTTGAGAATCCTAGAGGACTTGCACTTCACCCTCGATATGG
Seq C2 exon
GCACGTCTACTGGGCAGACTGGGGTGACCGAGCATACATTGGGAGAGTAGGCATGGATGGAACCCTTAAGTCTCTGATTATCTCTACCAAGATCATGTGGCCCAATGGCCTCACCATTGATTACACCAATGATCTACTCTACTGGGCAGATGCCCACCTGGGTTACATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004555-'57-57,'57-56,61-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126622=cEGF=WD(100=13.9),PF146701=FXa_inhibition=WD(100=20.8),PF0005812=Ldl_recept_b=WD(100=23.7),PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
PF0005812=Ldl_recept_b=WD(100=94.2),PF0005812=Ldl_recept_b=PU(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=WD(100=72.4),PF0005812=Ldl_recept_b=PU(31.0=22.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCATCTTGCAAGGACTGGG
R:
CCATCCATGCCTACTCTCCCA
Band lengths:
246-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]