RnoEX6017286 @ rn6
Exon Skipping
Gene
ENSRNOG00000056184 | Lrp2
Description
LDL receptor related protein 2 [Source:RGD Symbol;Acc:68407]
Coordinates
chr3:55705778-55707476:-
Coord C1 exon
chr3:55706960-55707476
Coord A exon
chr3:55706374-55706526
Coord C2 exon
chr3:55705778-55705948
Length
153 bp
Sequences
Splice sites
3' ss Seq
CTGCTGTCTTTCCATTGCAGAAA
3' ss Score
11.9
5' ss Seq
AGGGTACGG
5' ss Score
7.86
Exon sequences
Seq C1 exon
GATTCTTCAATCAGTCGCTGTGACCACAACTGTACAGATACCATAACTAGTTTCTACTGTTCCTGTCTCCCTGGCTACAAGCTCATGTCTGACAAACGCTCTTGCGTGGATATTGACGAATGCAAGGAGTCACCCCAGCTCTGTAGCCAGAAGTGTGAGAATGTGGTAGGCTCCTATATTTGCAAGTGTGCCCCTGGCTACATCCGTGAGCCAGATGGGAAGAGCTGCCGGCAGAATAGTAACATCGAGCCCTATCTCATCTTTAGCAACCGTTACTATATAAGAAACTTAACTACAGATGGCTCATCTTACTCCCTGATTTTGCAAGGATTGGGCAATGTTGTGGCCCTGGACTTTGATAGAGTAGAAAAGAGGCTGTATTGGATTGATGCAGAGAAGCAAATCATTGAGAGGATGTTTTTGAATAAGACAAACCGGGAGACCATCATAAACCACAGGTTAAGACGTGCTGAAAGTCTGGCTGTAGACTGGGTCAGCAG
Seq A exon
AAAACTCTATTGGTTGGATGCCATCTTGGACTGCCTGTTTGTCTCTGACCTTGAAGGTCGACACCGCAAAATGATAGCCCAGCACTGTGTGGATGCTAACAATACCTTCTGCTTTGAACATCCCAGGGGAATTGTCCTTCATCCTCAAAGAGG
Seq C2 exon
GCATGTCTACTGGGCAGATTGGGGTGTTCACGCATACATTGGAAGGATTGGCATGGATGGAACCAATAAGTCTGTGATCATCTCTACCAAGATAGAATGGCCCAATGCCATCACCATTGACTACACCAACGATCTCTTGTACTGGGCAGATGCTCACCTGGGTTATATCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056184-'63-72,'63-71,64-72=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126622=cEGF=WD(100=13.9),PF146701=FXa_inhibition=WD(100=20.8),PF0005812=Ldl_recept_b=WD(100=23.7),PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
PF0005812=Ldl_recept_b=WD(100=94.2),PF0005812=Ldl_recept_b=PU(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=WD(100=72.4),PF0005812=Ldl_recept_b=PU(31.7=22.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGGATTGGGCAATGTTG
R:
TGGTTCCATCCATGCCAATCC
Band lengths:
243-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]