GgaEX1033904 @ galGal4
Exon Skipping
Gene
ENSGALG00000010858 | LRP2
Description
low density lipoprotein receptor-related protein 2 [Source:HGNC Symbol;Acc:HGNC:6694]
Coordinates
chr7:18310272-18313507:+
Coord C1 exon
chr7:18310272-18310788
Coord A exon
chr7:18312700-18312852
Coord C2 exon
chr7:18313337-18313507
Length
153 bp
Sequences
Splice sites
3' ss Seq
TTAACTCTAAAACATTTCAGAAA
3' ss Score
4.82
5' ss Seq
CGGGTATGA
5' ss Score
7.63
Exon sequences
Seq C1 exon
GACCCTTCAATCAGTGGATGTGATCATGTCTGCACGGACACCCAAACAAGTTTCTACTGTTCTTGTCATCCTGGATACAAACTTATGTCAGATAAACGAACTTGTGATGATATTGATGAGTGCAATGAAACTCCATCAGTATGTAGCCAGATTTGTGAGAACACAGCTGGCTCCTACATCTGTAAGTGTGCCCCAGGCTATATCCGGGAGCCTGATGGAAAAAGTTGCCGACAAAATAGTAATATCTCCCCATACCTTATTTTTAGCAACCGTTACTATCTGAGAAATCTCACAGCAGATGGCCAGTCTTACTCTCTCATTTTGCAAGGACTGAGAAATGTGGTGGCACTGGACTTTGACAGGGTCGAAAAAAGGTTGTACTGGATTGATGTGGGGAGGAAGGTCATTGAACGGATGTTCCTAAATGGAACAAATAAGGAGGCTGTGATAAGTGATGATGTGCCGAATGGGGAAGGTATCGCTGTTGACTGGGTTGGCAG
Seq A exon
AAAATTGTACTGGGTGGATGCCTACAAAGATTGCATCTATGTCTCTGAACTTGATGGAAGATTCCAGAAAAAACTAGTGGATCGGTGTGTGGATATCAACAACACTTACTGCTTTCAGCATCCCAGAGCAATTGTTGTTCATCCAAAATACGG
Seq C2 exon
ACAGGTTTACTGGACAGACTGGGCAGATCGAGCTTATATTGGACGAGCAGGCATGGATGGCAAGGAGAAGATGGTGATTATCTCTACAAAGTTAGAGTGGCCCAATGGACTCACCATAGATTACACCAACGACAAGCTCTACTGGGCAGATGCCCATCTAAATTACATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010858_MULTIEX1-12/29=11-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126622=cEGF=WD(100=13.9),PF146701=FXa_inhibition=WD(100=20.8),PF0005812=Ldl_recept_b=WD(100=23.7),PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
PF0005812=Ldl_recept_b=WD(100=94.2),PF0005812=Ldl_recept_b=PU(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=WD(100=72.4),PF0005812=Ldl_recept_b=PU(31.7=22.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGGGAGGAAGGTCATTGA
R:
GCCCAGTAGAGCTTGTCGTTG
Band lengths:
258-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]