BtaEX6009250 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004555 | LRP2
Description
low density lipoprotein receptor-related protein 2 [Source:HGNC Symbol;Acc:HGNC:6694]
Coordinates
chr2:26999732-27002442:+
Coord C1 exon
chr2:26999732-26999960
Coord A exon
chr2:27000592-27000766
Coord C2 exon
chr2:27002320-27002442
Length
175 bp
Sequences
Splice sites
3' ss Seq
TGTTCTCTTCTGCTTCACAGATT
3' ss Score
9.92
5' ss Seq
TTTGTACGT
5' ss Score
3.25
Exon sequences
Seq C1 exon
TGACCGTGTGATGTTCTGGTCTGACTGGGGCAGTCACCCTCGCATTGAGCGAGCTAGCATGGATGGCAGTCAGCGCACCATCATTGTGCAGGAGAAGATCTACTGGCCCAATGGATTAGCTCTTGACTACCCCAACAGGCTACTCTATTTCATGGATGGCTATCTTGATTACCTAGACTTCTGTCACTACGATGGAAGCAATCGGAGGCAGGTGATAGCCAGTGATTTG
Seq A exon
ATTCTGCGCCATCCTTACTCCATAAGTCTTTTTGAAGATACTGTGTACTGGAGCGATCGTGCTACTCATGAGGTTATGAAAGCCAATAAGTGGCATGGGGGGAACCAGTCAGTGGTGATGACTCTTCACCAGCCTCTTGGCATTGTTGTGGTTCATCCTGCAAAACAGCCAGTTT
Seq C2 exon
CCTCAAATCCGTGCAGCTATACCCGATGCAGCCATCTGTGCCTGCTTTCCTCAAAGAGCCTTTACTCCTGTGCTTGTCCTTCTGGGTGGAGTCTTGCTCGTGATTCTGTGACTTGCGTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004555-'29-30,'29-29,30-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=54.5)
A:
PF146701=FXa_inhibition=PU(0.1=0.0)
C2:
PF146701=FXa_inhibition=WD(100=92.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCATCATTGTGCAGGAGA
R:
CACCCAGAAGGACAAGCACAG
Band lengths:
243-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]