GgaEX0016212 @ galGal3
Exon Skipping
Gene
ENSGALG00000010858 | LRP2
Description
NA
Coordinates
chr7:20251479-20254843:+
Coord C1 exon
chr7:20251479-20251707
Coord A exon
chr7:20252724-20252901
Coord C2 exon
chr7:20254715-20254843
Length
178 bp
Sequences
Splice sites
3' ss Seq
TAAACATTCTTGCGTCACAGGTT
3' ss Score
8.15
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
TGCTCATGTGATGTTCTGGACTGACTGGGGCCAAAACCCCCGAATTGAAAAAGCCAGCATGGATGGCAAATTGCGAACAGTGATTATTAGCAGTAAAATCTACTGGCCCAATGGACTCTCCATTGACTACCCAAATAAACTTCTGTATTTTGCTGATGCTTATCTTGATTATATTGACTTTTGTGATTACAATGGGAACAACAGACGACAGGTGGTTGCGAGTGATTTG
Seq A exon
GTTTTGCAACATCCTCATGGTCTAACTATCTTTGAAGATTTTGTCTACTGGAGTGACCGGTATACTAATCGAGTAATTAGGGCCAATAAATGGCATGGAGGAAACCAAACAGTTATGATTTATAACATCCACCAACCTCTGGGGCTTGTGGCAGTTCATCCTGTAAAGCAACCTTATG
Seq C2 exon
GTATCAATTCCTGTGCATCATCACCCTGTAGCCACCTCTGCTTGCTTTCATCATCTGGACCACTTTTTTTTTCCTGTGCTTGTCCTTCTGGATGGATGCTTTCTCCTGACAACAGAAACTGCATGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010858-'31-32,'31-31,32-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=53.2),PF0005812=Ldl_recept_b=PU(69.8=39.0)
A:
PF0005812=Ldl_recept_b=PD(25.6=18.3)
C2:
PF146701=FXa_inhibition=WD(100=84.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCCGAATTGAAAAAGCCA
R:
AAAGCAAGCAGAGGTGGCTAC
Band lengths:
242-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]