DreEX0043727 @ danRer10
Exon Skipping
Gene
ENSDARG00000102506 | lrp2a
Description
low density lipoprotein receptor-related protein 2a [Source:ZFIN;Acc:ZDB-GENE-050119-2]
Coordinates
chr9:48841215-48843744:+
Coord C1 exon
chr9:48841215-48841443
Coord A exon
chr9:48842033-48842210
Coord C2 exon
chr9:48843610-48843744
Length
178 bp
Sequences
Splice sites
3' ss Seq
TCTTGTTTCTCAATGGAAAGGTA
3' ss Score
3.98
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
CACTCACCTGATGTTTTGGACTGACTGGGGCAGAAATCCTCGTATTGAGAGAGCCAGTATGGATGGCAAGTTAAGGACCACAATCATCAGCAACAAACTCTACTGGCCCAATGGATTGACGATTGACTACCCCAACAGTCTACTATACTTCGCTGACGCTTATCTAGACTTTATAGACTACTGCGATTACGATGGAAAGAACCGAAAACAAGTACTGGCCAGTGATTTG
Seq A exon
GTACTGCAACATCCCCACGCAATTACCATTTTTGAGGATTTTGTCTATTGGACCGACAGATACGTCAACCGCGTGATCCGGGCCAACAAGTGGCACGGACAGAACCAGTCGGTGATGCTGTATAATCTGCCCCAGCCAATGGGTCTGGTGGCACTTCACCCTGCTAGACAGCCAGCAG
Seq C2 exon
GTTATAACCCATGTGATCCTCATTCAAGCCCCTGCACTCATATCTGCCTGCTGTCAGCAGTCGGTCCCAGGTTTTACTCCTGTGCCTGTCCGTCTGGCTGGACTCTCGCCGCTGACCAGTTCACATGTGCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102506-'30-38,'30-36,31-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=54.5),PF0005812=Ldl_recept_b=PU(69.8=39.0)
A:
PF0005812=Ldl_recept_b=PD(25.6=18.3)
C2:
PF146701=FXa_inhibition=WD(100=84.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGGGCAGAAATCCTCGTA
R:
ATGAGTGCAGGGGCTTGAATG
Band lengths:
247-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]