BtaEX6009324 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019137 | SCN7A
Description
sodium channel, voltage gated, type VII alpha subunit [Source:HGNC Symbol;Acc:HGNC:10594]
Coordinates
chr2:29987158-29990022:+
Coord C1 exon
chr2:29987158-29987211
Coord A exon
chr2:29987937-29988074
Coord C2 exon
chr2:29989918-29990022
Length
138 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTTTTAATTTTTAGGTA
3' ss Score
11.73
5' ss Seq
AAGATAAGT
5' ss Score
2.82
Exon sequences
Seq C1 exon
GCAACATTTAATGGATGGATCACTATTATGAATTCAGCAGTTGATTCTACTGAT
Seq A exon
GTAGATATGCAACCTAATTTTGAAAACAACATCTATATGTATTGTTACTTTATTGACTTTATTATCATTGGATTATTTCTTCCTCTGAGTATGTTGATTGGTGCTATTGTTGCCAATTTCCACAAGCATAAAATAAAG
Seq C2 exon
CAGGGAGGCTCAAATATCTTTATAACAGTGAAACAGAAGAAACAGTATCGTGCACTGAAGAAGCTGATGTATGAAGACTCTCAACAACCAGTACCTCTCCCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019137-'25-27,'25-26,26-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(7.6=100)
A:
PF0052026=Ion_trans=PD(15.7=76.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACATTTAATGGATGGATCACT
R:
TCTGGGAGAGGTACTGGTTGT
Band lengths:
158-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]