MmuEX6101801 @ mm10
Exon Skipping
Gene
ENSMUSG00000034810 | Scn7a
Description
sodium channel, voltage-gated, type VII, alpha [Source:MGI Symbol;Acc:MGI:102965]
Coordinates
chr2:66680864-66683320:-
Coord C1 exon
chr2:66683267-66683320
Coord A exon
chr2:66682705-66682842
Coord C2 exon
chr2:66680864-66680968
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTTTTCGCATTTAATTTTAGGTA
3' ss Score
10.59
5' ss Seq
AAGATAAGT
5' ss Score
2.82
Exon sequences
Seq C1 exon
GCAACATTTAATGGATGGATCAGTATTATGAATTCAGCAATTGATTCTGTTGGT
Seq A exon
GTAAACATGCAGCCCAGCTTTGAGTACAACCTCTACATGTATAGTTACTTTATCATCTTTGTTATCTTTGGATTATTTCTTCCTCTCTGTATGCTGATTGGTGTTATTATTCGCAATTTCAACAAGCAGAAAATTAAG
Seq C2 exon
CAGGGAGGATCAAACATCTTTATAACAGTAAAACAGAAAAAACAGTACCGGGCCCTGAAGAAGCTCTTGTATGCAGACGTCCAGAAACCAACACCCCGCCCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034810-'25-31,'25-30,26-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(7.6=100)
A:
PF0052026=Ion_trans=PD(15.7=76.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACATTTAATGGATGGATCAGT
R:
GGCGGGGTGTTGGTTTCTG
Band lengths:
154-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types