RnoEX6017208 @ rn6
Exon Skipping
Gene
ENSRNOG00000029342 | Scn7a
Description
sodium voltage-gated channel alpha subunit 7 [Source:RGD Symbol;Acc:61922]
Coordinates
chr3:52782292-52783784:-
Coord C1 exon
chr3:52783731-52783784
Coord A exon
chr3:52783221-52783358
Coord C2 exon
chr3:52782292-52782396
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTTTTCACATTTAATTTTAGGTG
3' ss Score
10.45
5' ss Seq
AAGATAAGT
5' ss Score
2.82
Exon sequences
Seq C1 exon
GCAACATTTAATGGGTGGATCAGTATTATGAATTCAGCAATTGACTCTGTTGGT
Seq A exon
GTGTACATGCAGCCTAGTTTTGAGCACAGCCTCCACATGTACACTTACTTTATCATCTTTGTTGTGTTTGGATTATTTCTTCCCTTGTGTATGCTGATTGGTGTTATTATCAGGAATTTCAACAAGCAGAAAATTAAG
Seq C2 exon
CAGGGAGGATCAAATATCTTTATAACGGTAAAGCAGAAGAAACAGTACCGGGCACTGAAGAAGCTCTTGTATGCAGACTCTCAGAAACCAGCAGCCCGCCCTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029342-'33-41,'33-39,34-41=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(7.6=100)
A:
PF0052026=Ion_trans=PD(15.7=76.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACATTTAATGGGTGGATCAGT
R:
GGCTGCTGGTTTCTGAGAGTC
Band lengths:
150-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]