DreEX6081076 @ danRer10
Exon Skipping
Gene
ENSDARG00000005775 | scn8aa
Description
sodium channel, voltage gated, type VIII, alpha subunit a [Source:ZFIN;Acc:ZDB-GENE-000828-1]
Coordinates
chr23:27327373-27327848:-
Coord C1 exon
chr23:27327795-27327848
Coord A exon
chr23:27327571-27327708
Coord C2 exon
chr23:27327373-27327477
Length
138 bp
Sequences
Splice sites
3' ss Seq
AAATTTCATTCTCTTCTCAGGTG
3' ss Score
8.98
5' ss Seq
AAGATAAGT
5' ss Score
2.82
Exon sequences
Seq C1 exon
GCAACCTTTAAAGGATGGATGGACATCATGTATGCAGCAGTTGACTCACGAAGG
Seq A exon
GTGGAAGACCAGCCGAAGTATGAAGACAATATCTACATGTATATCTATTTTGTCATCTTCATTATATTTGGCTCTTTCTTCACCCTCAATCTCTTCATTGGTGTGATTATTGATAACTTCAACCAGCAGAAGAAAAAG
Seq C2 exon
TTTGGAGGTCAGGATATCTTCATGACTGAGGAACAGAAAAAGTACTACAATGCAATGAAAAAGCTTGGCTCAAAGAAACCTCAGAAGCCCATACCCAGACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005775-'30-35,'30-34,31-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(7.4=100)
A:
PF0052026=Ion_trans=PD(15.2=76.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGATGGACATCATGTATGCA
R:
CTGGGGTCTGGGTATGGGC
Band lengths:
146-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]