RnoEX6034127 @ rn6
Exon Skipping
Gene
ENSRNOG00000005309 | Scn8a
Description
sodium voltage-gated channel alpha subunit 8 [Source:RGD Symbol;Acc:3638]
Coordinates
chr7:142674737-142676504:+
Coord C1 exon
chr7:142674737-142674790
Coord A exon
chr7:142675149-142675286
Coord C2 exon
chr7:142676400-142676504
Length
138 bp
Sequences
Splice sites
3' ss Seq
TCTCTTCTGTCCTTGGACAGCCA
3' ss Score
8.36
5' ss Seq
AAGATAGGT
5' ss Score
2.1
Exon sequences
Seq C1 exon
GCAACCTTCAAAGGCTGGATGGACATCATGTATGCGGCTGTAGATTCCCGAAAG
Seq A exon
CCAGACGAGCAGCCTGACTACGAGGGCAACATCTACATGTACATCTACTTCGTCATCTTCATCATCTTCGGCTCCTTCTTCACCCTCAACCTGTTCATCGGTGTCATCATCGACAACTTCAACCAGCAGAAGAAAAAG
Seq C2 exon
TTTGGAGGTCAGGACATCTTCATGACAGAGGAACAGAAGAAGTACTACAATGCCATGAAAAAGCTGGGCTCCAAGAAGCCACAGAAGCCCATCCCCCGACCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005309-'52-48,'52-46,53-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(7.4=100)
A:
PF0052026=Ion_trans=PD(15.2=76.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCAAAGGCTGGATGGACA
R:
CAAGGGTCGGGGGATGGG
Band lengths:
155-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]