BtaEX6009327 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019137 | SCN7A
Description
sodium channel, voltage gated, type VII alpha subunit [Source:HGNC Symbol;Acc:HGNC:10594]
Coordinates
chr2:29980708-29986144:+
Coord C1 exon
chr2:29980708-29980881
Coord A exon
chr2:29982548-29982655
Coord C2 exon
chr2:29985866-29986144
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTTATTTATATATATCCAGGTG
3' ss Score
7.99
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCTTTTGAAGATATATATATTGATCAGAGAAAGACTATTAAAATCTTATTAGAATATGCTGACATGATCTTCACCTACATCTTTATTCTGGAAATGCTTCTAAAGTGGATGGCATATGGTTTTAAAGCCTATTTCACTAATGGCTGGTACAAACTAGACTTCATGGTTGTTATC
Seq A exon
GTGTTCTGTCTTAGTTTAATAGGCAAATCTCGGGAAGAACTAAAACCGCTTGTTTCCATTAAATTCCTTCGGGCACTCAGAGTTCTATCTCAATTTGAAAAAATGAAG
Seq C2 exon
GTGGTAGTGAGAGCTTTGATTAAAACAACTTTACCCACATTGAATGTGTTTCTGGTCTGCCTTATGATCTGGCTGGCTTTTGGCATCATAGGAGTACACTTATTTGCTGGCAAATTCTATGAGTGCATTGACCCAACAAGTGGAGAAAGGTTTCCTCTATCTGAAGTCATGAACAGAAGTCAATGTGAAAGCCTTGTATTTAATGAATCCATGCCATGGGAGAATGCAAAACTAAATTTTGATAATGTTGGAATCAGTTTTCTTTCACTGCTTCAAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019137-'22-24,'22-23,23-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(17.5=67.2)
A:
PF0052026=Ion_trans=FE(15.7=100)
C2:
PF0052026=Ion_trans=FE(41.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGACATGATCTTCACCTACA
R:
ACTTGTTGGGTCAATGCACTCA
Band lengths:
258-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]