MmuEX6101798 @ mm10
Exon Skipping
Gene
ENSMUSG00000034810 | Scn7a
Description
sodium channel, voltage-gated, type VII, alpha [Source:MGI Symbol;Acc:MGI:102965]
Coordinates
chr2:66684015-66689705:-
Coord C1 exon
chr2:66689532-66689705
Coord A exon
chr2:66687731-66687838
Coord C2 exon
chr2:66684015-66684293
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTACATATGTGCAGGTG
3' ss Score
8.26
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCTCTTGAAGACATATATATTGATCAGAGAAAAACCACTAAAATCTTACTGGAATATGCGGACATGATATTTGCATACATCTTCATTCTGGAGATGCTTCTCAAGTGGGTGGCTTATGGCTTTAAAGCCTTTTTCTCCAACAACTGGTACAAACTGGACTTTATGGTTGTTATC
Seq A exon
GTGTTTTGTCTTAGCTTAATAGGCAAAACTCGAGAAGATCTGAACCCTCTGACATCAATAAAGTTCCTTCGAGCACTAAGAGTTCTGTCGCAGTTTGAAAGAATGAAG
Seq C2 exon
GTGGTCCTGAGAGCTTTGATAAAAACAACCTTACCCACTGTGAGCGTGTTTCTAGTCTGCCTAATGATCTGGCTGCTTTTCAGTGTTATTGGAGTGCAGTTATTTGCTGGCAAGTTCTATGAATGCATTGACCCAACAAAGGGAGAAAGATTCCCTGTATTTGAAGTTATGAATAAAAGTCAGTGTGAAAAACTGTTATTCAATGAATCAATGCCGTGGGAGAATGCAAAACTGAACTTTGATAATGTTGGAAATGGTTTTCTTTCTTTACTCCAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034810-'22-27,'22-26,23-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(17.5=67.2)
A:
PF0052026=Ion_trans=FE(15.7=100)
C2:
PF0052026=Ion_trans=FE(41.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGCTTCTCAAGTGGGTGG
R:
ACAGGGAATCTTTCTCCCTTTGT
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types