MmuEX6101798 @ mm9
Exon Skipping
Gene
ENSMUSG00000034810 | Scn7a
Description
sodium channel, voltage-gated, type VII, alpha [Source:MGI Symbol;Acc:MGI:102965]
Coordinates
chr2:66522072-66527762:-
Coord C1 exon
chr2:66527589-66527762
Coord A exon
chr2:66525788-66525895
Coord C2 exon
chr2:66522072-66522350
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTACATATGTGCAGGTG
3' ss Score
8.26
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCTCTTGAAGACATATATATTGATCAGAGAAAAACCACTAAAATCTTACTGGAATATGCGGACATGATATTTGCATACATCTTCATTCTGGAGATGCTTCTCAAGTGGGTGGCTTATGGCTTTAAAGCCTTTTTCTCCAACAACTGGTACAAACTGGACTTTATGGTTGTTATC
Seq A exon
GTGTTTTGTCTTAGCTTAATAGGCAAAACTCGAGAAGATCTGAACCCTCTGACATCAATAAAGTTCCTTCGAGCACTAAGAGTTCTGTCGCAGTTTGAAAGAATGAAG
Seq C2 exon
GTGGTCCTGAGAGCTTTGATAAAAACAACCTTACCCACTGTGAGCGTGTTTCTAGTCTGCCTAATGATCTGGCTGCTTTTCAGTGTTATTGGAGTGCAGTTATTTGCTGGCAAGTTCTATGAATGCATTGACCCAACAAAGGGAGAAAGATTCCCTGTATTTGAAGTTATGAATAAAAGTCAGTGTGAAAAACTGTTATTCAATGAATCAATGCCGTGGGAGAATGCAAAACTGAACTTTGATAATGTTGGAAATGGTTTTCTTTCTTTACTCCAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034810-'17-19,'17-18,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(17.5=67.2)
A:
PF0052026=Ion_trans=FE(15.7=100)
C2:
PF0052026=Ion_trans=FE(41.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGCTTCTCAAGTGGGTGG
R:
ACAGGGAATCTTTCTCCCTTTGT
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: