RnoEX0078597 @ rn6
Exon Skipping
Gene
ENSRNOG00000029342 | Scn7a
Description
sodium voltage-gated channel alpha subunit 7 [Source:RGD Symbol;Acc:61922]
Coordinates
chr3:52784606-52791718:-
Coord C1 exon
chr3:52791545-52791718
Coord A exon
chr3:52789153-52789260
Coord C2 exon
chr3:52784606-52784884
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTAACACATGTGCAGGTG
3' ss Score
7.19
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCTCTGGAAGACATATATATTGATCAGCGGAAAACCATTAAAATCTTCCTGGAGTATGGAGACATGATATTTGCTTACATCTTCATTCTGGAGATGCTTCTCAAGTGGGTGGCCTACGGCTTTAAAGCCTACTTCTCTAACAACTGGTACAAGCTGGACTTCATGGTCGTTATC
Seq A exon
GTGTTGTGTCTTAGCTTAATAGGCAAAACTCGAGAGGACCTGAACCCTCTGGCTTCCATAAAGTTCCTTCGAGCACTTAGAGTTCTGTCTCAGTTTGAAAGAATGAAG
Seq C2 exon
GTGGTTCTGAGAGCTTTGATAAAAACAACCTTACCCGCTGTGAGCGTGTTTCTGGTCTGCCTAATGATCTGGCTGCTTTTCAGTGTTATGGGAGTGTTCTTATTCGCTGGCAAGTTCTATGAATGCATTGACCCAACAAGGGGAGAAAGATTCTCTGTATTTGAAGTTATGAATAAGAGTCAGTGTGAAAACCTGGTATTTAATGAATCAATGCCATGGGAGAATGCAAAACTGAACTTTGATAATGTTGGAAATGGTTTTCTTTCTTTGTTCCAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029342_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(17.5=67.2)
A:
PF0052026=Ion_trans=FE(15.7=100)
C2:
PF0052026=Ion_trans=FE(41.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCTGGACTTCATGGTCGT
R:
TGCATTCTCCCATGGCATTGA
Band lengths:
253-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]