BtaEX6009381 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016512 | TTC21B
Description
Bos taurus tetratricopeptide repeat domain 21B (TTC21B), mRNA. [Source:RefSeq mRNA;Acc:NM_001102108]
Coordinates
chr2:30485760-30503361:+
Coord C1 exon
chr2:30485760-30485870
Coord A exon
chr2:30486737-30486818
Coord C2 exon
chr2:30503211-30503361
Length
82 bp
Sequences
Splice sites
3' ss Seq
ACCAACTTTTACCTTTATAGATG
3' ss Score
9.39
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
ATAATGCTGGAGCTGGCCCGATTATACCTGCTACAAGATGACCCTGACGCCTGCCTGCGGCACTGCGCGCTGCTTCTCCAGAGCGACCAGGACAATGAGGCCGCCACCATG
Seq A exon
ATGATGGCAGATCTCATGTTCAGAAAACAAGACTACGAACAAGCCGTGTTTCATTTACAACAGCTTTTAGAACGAAAACCAG
Seq C2 exon
ATAATTATATGACGTTATCTCGTTTAATTGATTTCTTAAGAAGATGTGGAAAACTTGAAGATGTTCCACGATTTTTCTTAATGGCTGAGAAACGTAACTCCAGAGCAAAACTGGAGCCAGGATTTCAGTACTGTAAAGGATTATATCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016512-'24-31,'24-28,25-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=FE(52.9=100)
A:
PF145591=TPR_19=PD(5.9=14.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAAGATGACCCTGACGCCT
R:
TGGAGTTACGTTTCTCAGCCA
Band lengths:
182-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]