HsaEX0067826 @ hg19
Exon Skipping
Gene
ENSG00000123607 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:25660]
Coordinates
chr2:166747348-166756390:-
Coord C1 exon
chr2:166756280-166756390
Coord A exon
chr2:166755196-166755277
Coord C2 exon
chr2:166747348-166747498
Length
82 bp
Sequences
Splice sites
3' ss Seq
ACCAACTTTTATCTTTATAGATG
3' ss Score
9.29
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
ATTATGTTGGAACTGGCACGATTATACCTGGCACAAGATGACCCTGATTCCTGCCTGCGGCAGTGTGCTCTACTGCTTCAGAGTGACCAGGATAACGAAGCTGCTACCATG
Seq A exon
ATGATGGCTGATCTCATGTTCAGAAAACAAGACTATGAACAAGCAGTGTTTCATTTACAGCAGCTTTTAGAACGTAAGCCAG
Seq C2 exon
ATAATTATATGACATTATCTCGTTTGATTGATCTCCTAAGAAGATGTGGAAAACTCGAGGATGTCCCAAGATTTTTCTCAATGGCTGAGAAACGTAACTCCAGAGCAAAATTGGAACCAGGATTTCAGTATTGTAAAGGACTGTATCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123607-'26-27,'26-25,27-27
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.036 C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=FE(52.9=100)
A:
PF145591=TPR_19=PD(5.9=14.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGCACGATTATACCTGGC
R:
GGGACATCCTCGAGTTTTCCAC
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)