GgaEX0016406 @ galGal4
Exon Skipping
Gene
ENSGALG00000010956 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:HGNC:25660]
Coordinates
chr7:19176759-19178887:+
Coord C1 exon
chr7:19176759-19176869
Coord A exon
chr7:19177965-19178046
Coord C2 exon
chr7:19178737-19178887
Length
82 bp
Sequences
Splice sites
3' ss Seq
TGAATTGGTCGATGCTGTAGATG
3' ss Score
3.11
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GCAATGTTGGAACTAGCACGTTTGTATCTTGCACAAGATGATAGTGACGCCTGTCAGCATCAGTGTTCCTTGTTACTGAGGAGTGAGCAAGATAACGAAGCAGCAACGATG
Seq A exon
ATGATGGCTGACCTCATGTTCAGGAAGCAAGACTATGAACAAGCAGTCTTTCATTTCCAGCAGCTCCTCGAACGCAAGCCAG
Seq C2 exon
ATAACTATGCCACTCTGTCACGATTAATTGATCTGTTAAGAAGAGCTGGGAAACTAGAAGAAGTCCCAAGATTTCTTTTAATGGCTGAAAAACATTCTTCTAGAGCAAAGCTCGAACCAGGCTTTCACTACTGCAAAGGACTGTATCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956-'34-34,'34-32,36-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=FE(53.7=100)
A:
PF145591=TPR_19=PD(6.0=14.3),PF145591=TPR_19=PU(40.7=78.6)
C2:
PF145591=TPR_19=PD(57.4=60.8),PF0771912=TPR_2=PU(34.4=21.6)
Main Skipping Isoform:
ENSGALT00000038446fB13278
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTGTTACTGAGGAGTGAGCA
R:
GTGAAAGCCTGGTTCGAGCTT
Band lengths:
173-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]