DreEX0081908 @ danRer10
Exon Skipping
Gene
ENSDARG00000012368 | ttc21b
Description
tetratricopeptide repeat domain 21B [Source:ZFIN;Acc:ZDB-GENE-031010-34]
Coordinates
chr9:50124014-50126783:-
Coord C1 exon
chr9:50126673-50126783
Coord A exon
chr9:50124312-50124393
Coord C2 exon
chr9:50124014-50124164
Length
82 bp
Sequences
Splice sites
3' ss Seq
CCGTTTCATGTGTTTGTTAGATG
3' ss Score
6.96
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTGATGCTGGAACTGGCTCAGCTTTACCTCACTCTGGATGATGTGGAGGCCTGTCAGCAGCAGTGCAGTGCCATTCTGAAAAACGACCCGGTCAATGAGTCCGCCACGTTG
Seq A exon
ATGATGGCAGATCTCATGTTCCGGAAGCAGGACTATGAACAGGCTGTATTTCACTTCCAGCAGCTCTTGGAGAGGAAACCAG
Seq C2 exon
ACAACTACCCAACACTGTCCCGCCTCATCGACCTGCTGCGCAGAGCCGGAAAACTGGAGGAGGTGCCAAGATTCCTGGAGATGGCAGAGAAACACTCATCCAGGGCCAAGTTTGAGCCTGGATACAATTACTGCAAAGGCCTTTACCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012368-'22-26,'22-25,23-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(42.6=78.4),PF134321=TPR_16=PU(0.1=0.0)
A:
PF131761=TPR_7=PD(5.6=7.1),PF134321=TPR_16=PU(54.0=96.4)
C2:
PF134321=TPR_16=PD(54.7=68.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGCTGGAACTGGCTCAG
R:
ATCTTGGCACCTCCTCCAGTT
Band lengths:
183-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]