MmuEX6101736 @ mm10
Exon Skipping
Gene
ENSMUSG00000034848 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:MGI Symbol;Acc:MGI:1920918]
Coordinates
chr2:66201473-66208764:-
Coord C1 exon
chr2:66208654-66208764
Coord A exon
chr2:66207452-66207533
Coord C2 exon
chr2:66201473-66201623
Length
82 bp
Sequences
Splice sites
3' ss Seq
GACCCTGCCTATCTTTACAGTTG
3' ss Score
9.25
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
ATAATGTTGGAACTGGCGCAGTTATACCTGGCCCAAGAAGACCTTGACGCCTCCCTGCGACACTGTGCGCTGCTTCTCCAGAGGGACCAGGACAATGAACCTGCCACCATG
Seq A exon
TTGATGGCCGACCTCATGTTCAGAAAGCAAGACTATGAACAAGCAGTGTATCATCTGCAGCAGCTTTTAGACCGGAAACCAG
Seq C2 exon
ATAATTTTATGACTTTGTCCCGTTTGATTGATCTCCTGAGAAGATGTGGGAAACTTGAGGATGTTCCGAGATTTTTCTTGATGGCTGAGAAACACAACTCCAGAACAAAATTGGAGCCAGGATTTCAGTACTGTAAAGGATTACATTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034848-'37-37,'37-33,38-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=FE(52.9=100)
A:
PF145591=TPR_19=PD(5.9=14.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGACCTTGACGCCTCCC
R:
TGGAGTTGTGTTTCTCAGCCA
Band lengths:
179-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types