BtaEX6009393 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016512 | TTC21B
Description
Bos taurus tetratricopeptide repeat domain 21B (TTC21B), mRNA. [Source:RefSeq mRNA;Acc:NM_001102108]
Coordinates
chr2:30445203-30455687:+
Coord C1 exon
chr2:30445203-30445325
Coord A exon
chr2:30450105-30450262
Coord C2 exon
chr2:30455603-30455687
Length
158 bp
Sequences
Splice sites
3' ss Seq
TTACTTTTTTCTCCCATTAGGCA
3' ss Score
9.81
5' ss Seq
GAGGTTAAG
5' ss Score
1.12
Exon sequences
Seq C1 exon
GGACAGGTTTTGAGAGCATGGCTTGATATTACAAGAAGAAAAGAACCTTATACTAAAAAAGCATTAAGATACTTTGAAGAGGGATTGCAAGATGGGAATGATATTTTTGCTCTACTGGGTAAG
Seq A exon
GCACAATGCCTTGAGATGCGCCAGAATTATTCAGGTGCTCTGGAGACTGTGAACGAGATAATCATGAATTTTCCAAGTTTCCTTCCTGCTTTTGTAAAGAAAATGAAACTACAGCTAGCTTTGCAGGACTGGGACCAGACGGTTGAGACAGCACAGAG
Seq C2 exon
GTTGATGCTGCAAGATAATCAGAATTTGGAAGCACTGAGAATGCTGGCCCTTTACTATTTGTGTAGGGAGGGGGATATAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016512-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGTTTTGAGAGCATGGCT
R:
TCTCTATATCCCCCTCCCTACACA
Band lengths:
204-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]