RnoEX0094653 @ rn6
Exon Skipping
Gene
ENSRNOG00000005868 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:RGD Symbol;Acc:1565122]
Coordinates
chr3:52340068-52350478:-
Coord C1 exon
chr3:52350356-52350478
Coord A exon
chr3:52343119-52343276
Coord C2 exon
chr3:52340068-52340152
Length
158 bp
Sequences
Splice sites
3' ss Seq
TCATTTTTGTCTCCCATTAGGTA
3' ss Score
10.93
5' ss Seq
AAGGTTATG
5' ss Score
2.32
Exon sequences
Seq C1 exon
GGACCGATTTTGAAAGCATGGCTTGATATTACAAGAGGGAAGGAACCTTATGCTAAAAAAGCCCTACGGTATTTTGAGGAGGGATTACAAGATGGAAACGATATTTTTGCTCTGCTGGGTAAG
Seq A exon
GTACTGTGCCTTGAGATGCGACAGAATTATTCTGGAGCTCTGGAGACTGTGAGTCAGATAATTGTGAACTTCCCGAGCTTCCTTCCTGCTTTTGAGAAGAAAATGAAATTACAACTGGCTTTGCAGGATTGGGATCAGACGGTGGAGACGGCGCAAAG
Seq C2 exon
GTTGCTGCTTCAGGACGGCCACAATGTGGAGGCGCTGAGAATGCTGGCTTTATATTATCTGTGTAGGGAAGGGGACATAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005868-'8-10,'8-6,10-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.004 C2=0.000
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(42.9=73.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCGATTTTGAAAGCATGGC
R:
TATGTCCCCTTCCCTACACAGA
Band lengths:
202-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]