DreEX6038620 @ danRer10
Exon Skipping
Gene
ENSDARG00000012368 | ttc21b
Description
tetratricopeptide repeat domain 21B [Source:ZFIN;Acc:ZDB-GENE-031010-34]
Coordinates
chr9:50152946-50157198:-
Coord C1 exon
chr9:50157076-50157198
Coord A exon
chr9:50156106-50156263
Coord C2 exon
chr9:50152946-50153030
Length
158 bp
Sequences
Splice sites
3' ss Seq
AGCGTGTGTCTTTTTACCAGGTT
3' ss Score
8.53
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
GGAATTGTGCTAAAAGGCTGGATTGACCTGCGATCTAATAAAGATGCTTATGCAAAGAAGTCCGGGAAATACTTTGACGAAGCCTTGAAGGAGAAAAGTGACATTTTTGCTCTGATGGGGAAG
Seq A exon
GTTCATTATTATGAATATCGCCAGAATTATTCTGGTGCTTTAGACACCATTAACCAGGTGATTGTGAGTTACCCGTCCTTTCTACCGGCTCTGGTGAAGAAGATGAAGCTGCTGTTGACTCTGCAGGACTGGGAACAAACTGTGGATGCAGCTCAGAG
Seq C2 exon
GCTTCTCCAGCGGGAGAAAAATAACCTGGAGGCTCTGAGGATGCAGGCCCTGCACGCTCTCTGCCGGGATGGAGACATCGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012368-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTAAAAGGCTGGATTGACCT
R:
CTCAGCGATGTCTCCATCCCG
Band lengths:
202-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]