GgaEX7006018 @ galGal4
Exon Skipping
Gene
ENSGALG00000010956 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:HGNC:25660]
Coordinates
chr7:19157864-19160511:+
Coord C1 exon
chr7:19157864-19157986
Coord A exon
chr7:19159512-19159669
Coord C2 exon
chr7:19160427-19160511
Length
158 bp
Sequences
Splice sites
3' ss Seq
ATTTTTCTTCCTTCCATTAGGCA
3' ss Score
9.19
5' ss Seq
TAGGTTGAG
5' ss Score
-3.54
Exon sequences
Seq C1 exon
GGATTGATTCTGAAAGCATGGCTTGATCTCACTTGTGGGAAAGAAACTCATATTAAAAAAGCTTTGAAGTACTTTGATGAAGCGCTTCAGGAAGGGAATGATGTTTTTGCTCTCCTTGGTAAA
Seq A exon
GCACAGTATTTTGAGATCCGACAGAATTATTCAGGAGCTCTGGAAATGGTGAACCAGATAATTGCAAACTTTCCAAACTTCATTCCTGCTTTCATAAAGAAAATGAAGCTGCAACTAGCCTTGCAGGACTGGGAGCAGGCAGTTGAAACTGCACATAG
Seq C2 exon
ACTATTGCAGAAAGATGCTCTCAATTTAGAGGCCACAAGAATGGAGGCCCTGCATTTTCTGTGCAGAGAAGGAAAGATGCGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956-'6-9,'6-8,7-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTGATTCTGAAAGCATGGCT
R:
ACGCATCTTTCCTTCTCTGCA
Band lengths:
205-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]