MmuEX6101722 @ mm10
Exon Skipping
Gene
ENSMUSG00000034848 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:MGI Symbol;Acc:MGI:1920918]
Coordinates
chr2:66239523-66247430:-
Coord C1 exon
chr2:66247308-66247430
Coord A exon
chr2:66242631-66242788
Coord C2 exon
chr2:66239523-66239607
Length
158 bp
Sequences
Splice sites
3' ss Seq
CATTTTTCTCCTCCTATTAGGTT
3' ss Score
10.49
5' ss Seq
AAGGTTATG
5' ss Score
2.32
Exon sequences
Seq C1 exon
GGGCCGATTTTGAAAGCGTGGCTTGATATTACAAGAGGGAAGGAACCTTATGCTAAAAAAGCCCTGCGGTATTTTGAGGAGGGATTACAAGATGGAAATGATATTTTCGCTCTTCTGGGTAAG
Seq A exon
GTTCTGTGCCTTGAGATTCGACAGAATTATTCCGGAGCTCTGGAGACCGTGAGCCAGATAATTGTAAACTTTCCAAGCTTCCTTCCTGCCTTTGAGAAGAAAATGAAATTACAACTGGCTTTACAGGATTGGGATCAGACAGTGGAGACAGCACAAAG
Seq C2 exon
GCTGCTGCTTCAAGACAATCACAACGTGGAGGCGCTGAGGATGCTGGCTCTGTATTATCTGTGTAGGGAAGGGGACGTAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034848-'9-11,'9-9,10-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.008 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCGATTTTGAAAGCGTGG
R:
CTACGTCCCCTTCCCTACACA
Band lengths:
202-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types