BtaEX6009436 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr2:31643993-31654189:+
Coord C1 exon
chr2:31643993-31644194
Coord A exon
chr2:31647622-31647850
Coord C2 exon
chr2:31654092-31654189
Length
229 bp
Sequences
Splice sites
3' ss Seq
GGCTTTAATCTGTGTTTCAGAAA
3' ss Score
8.22
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
TAAACCTATGATGGACTTGTTGATTTTCCTCTGTGCACAATATCACTTAAATCCATCAAGTCACACAATTGATCTGCTCTCAGCTGAAAAGAACCCCATTAAATTTAAGCCAAACACACCAATAGGAATGTTGGAGGTGGAAAAAGTAATTTTAAAGCCAAAAATTCTGGATAAGAAGAAACCTACACCTTTAATACCAGAG
Seq A exon
AAAACTGTGAGAGTAGTGATCAATTTTAAGAAAACGCAGAAGACAATAGTAAGAGTTAGCCCACATGCACCTCTTCAAGAACTTATCGCCATTATATGCAGCAAATGTGAGTTTGATCCATTACACACACAGTTATTGAAGGACTATCAGTCTCAGGAGCCCCTTGACTTGACAAAATCTCTTAATGAACTGGGACTGAGGGAATTATATGCCATCGATGTCAGCAAAG
Seq C2 exon
AGTCCTGCCAAATATCACAAAACCTAGACCTTATGAAGGATAAAGAAAGTAAAGGGTTTTTCAGCTTATTTCAACGCAGTAAGAAAAAGCGGGAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005501-'9-6,'9-3,10-6=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.106
Domain overlap (PFAM):
C1:
PF0219610=RBD=PD(74.0=79.4)
A:
PF094695=Cobl=PU(59.5=61.0)
C2:
PF094695=Cobl=PD(39.2=93.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTATGATGGACTTGTTGATTTTCC
R:
TCCCGCTTTTTCTTACTGCGT
Band lengths:
293-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]