RnoEX0022653 @ rn6
Exon Skipping
Gene
ENSRNOG00000027016 | Cobll1
Description
cordon-bleu WH2 repeat protein-like 1 [Source:RGD Symbol;Acc:1308954]
Coordinates
chr3:51187821-51211564:-
Coord C1 exon
chr3:51211376-51211564
Coord A exon
chr3:51195812-51196040
Coord C2 exon
chr3:51187821-51187918
Length
229 bp
Sequences
Splice sites
3' ss Seq
TATCATAATTTACATTTCAGAAA
3' ss Score
7.18
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GAGGAAAACAAAAGCGAAGGCACCTCTCCCCCCTGCTGAGATGAAGGGCATGGATGTCTCTTCGGCTGAGGATCCTGTAGAATCTATTCCTGTCTCCACAGAGCAACATGACAATATGATAGATAAAGACATCGAACTCTCGGTGGTCCTGCCTGGAGATGTTCTCAAATCTACTACAGTTCATGGCAG
Seq A exon
AAAACTGTGAGAGTAGTGATCAATTTTAAGAAGACACAGAAGACCATAGTGAGAGTTAGTCCCCACTCACCGCTTCAAGACCTTGCTCCCATTATATGCAGTAAATGTGAGTTTGATCCATTGCATACAGTGTTGTTGAAGGATTACCAGGCTCAGGAGCCCCTCGACCTCACAAAGTCTCTTAATGACCTGGGACTAAGAGAGTTATATGCCATGGATATCAGCAGAG
Seq C2 exon
AGTCCTGCCAAATATCACATAACCCGGACATTGTGAAGGAGAAAGAAAACAAAGGGATTTTCAGCTTTTTCCAACGCAGTAAGAAAAAGCGAGAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027016_MULTIEX1-3/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.480 A=0.000 C2=0.333
Domain overlap (PFAM):
C1:
PF0219610=RBD=PU(24.7=36.0)
A:
PF094695=Cobl=PU(51.1=61.0)
C2:
PF094695=Cobl=PD(33.7=93.9)
Main Skipping Isoform:
ENSRNOT00000001607fB3349
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAAACAAAAGCGAAGGCAC
R:
GCTCTCGCTTTTTCTTACTGCG
Band lengths:
284-513
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]