DreEX6038661 @ danRer10
Exon Skipping
Gene
ENSDARG00000102829 | COBLL1 (2 of 2)
Description
cordon-bleu WH2 repeat protein-like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
Coordinates
chr9:50462411-50469910:+
Coord C1 exon
chr9:50462411-50462618
Coord A exon
chr9:50468997-50469222
Coord C2 exon
chr9:50469851-50469910
Length
226 bp
Sequences
Splice sites
3' ss Seq
TTCTATCTTGTCTCATTCAGGCC
3' ss Score
9.84
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
CAAGCCCATGATGGACCTGCTGGTGATGCTTTGTGCCCAGCACCACTTGAACCCGTCGGGCCACACCCTCGAGTTGATCACCACCAACAGAAACCATGTAAAGTTCAAACCCAACGCCCTCATCGGAGCCCTGGAGGCTGACAAGATCCTGCTGAAACCCAAAGGCATGGAGGACAAAAGCAAAAAGACAGGACCGCATATGCCTGAG
Seq A exon
GCCACTGTGCGATTAGTGATCAACTACAGAAAAACCCAGAAAACCATCCTGCGAGTGAGTCCTCGAGTTCCTCTGCGCGAGCTGCTCCCGGCGATCTGCCAGAAGTGTGAGTTTGACCCGCAGACCACACTTTTATCACCAAGCGTCCAATCAGAAGACACACTGGACCTGAGCGGATCCCTCAATGACTTCGGCCTGAGGGAAGTGTACGCAAGAGACACTAGAG
Seq C2 exon
TTATTAGTCCTGTAAGTCCTATCAGTCCAGTCAGTCTTCCTCCATCTCCAACTCGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102829-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.307 A=0.118 C2=0.732
Domain overlap (PFAM):
C1:
PF0219610=RBD=PD(71.8=72.9)
A:
PF094695=Cobl=PU(45.9=59.2)
C2:
PF094695=Cobl=FE(19.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCCCATGATGGACCTGC
R:
CTGAGCGAGTTGGAGATGGAG
Band lengths:
268-494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]