GgaEX6042545 @ galGal3
Exon Skipping
Gene
ENSGALG00000011068 | COBLL1
Description
NA
Coordinates
chr7:21569834-21573642:+
Coord C1 exon
chr7:21569834-21570035
Coord A exon
chr7:21571048-21571276
Coord C2 exon
chr7:21573545-21573642
Length
229 bp
Sequences
Splice sites
3' ss Seq
TGGAACCCTCTTCTCTTTAGCAA
3' ss Score
6.04
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GAAGCCCATGATGGACTTGCTGATCTTTCTCTGTGCACAGTATCATTTAAACCCCTCAAGCTACACTATAGAGTTGATATCAGCAGAAAACTGCCAGATTAAATTCAAACCTAATACACCAGTGGGAATGCTTGAAGTGGAAAAGGTGATTGTAAAACCAAAACAAATGGATAAGAAGAAACCTGTTCCAGTGATTCCAGAG
Seq A exon
CAAACAGTAAGGGTAGTGATAAACTACAAGAAGACACAGAAGACAGTAGTAAGAGTTAGTCCATATTCACCGCTTCAGGAACTCATACCAATTATCTGTAGTAAATGTGAATTTGATCCTTCACACACTGTGTTACTGAAGAATTACCAGTCTCAAGAAGCCCTTGATGTGACAAAATCTCTTAATGATCTTGGACTAAGAGAATTATATGCCATGGATATCAGTCGAG
Seq C2 exon
ATTCCTGTCGTGTGTCTGAAAACTCAGATGTTCTAAAAGAGAAAGAAAACAAAGGGTTTTTCAGCTTTTTTCAACGAAGCAAGAAAAAGAGAGAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011068-'1-6,'1-4,2-6=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.515
Domain overlap (PFAM):
C1:
NO
A:
PF094695=Cobl=PU(59.5=61.0)
C2:
PF094695=Cobl=PD(39.2=93.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCCATGATGGACTTGCTG
R:
TGCTCTCTCTTTTTCTTGCTTCGT
Band lengths:
298-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]