BtaEX6009454 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018446 | GCA
Description
grancalcin, EF-hand calcium binding protein [Source:HGNC Symbol;Acc:HGNC:15990]
Coordinates
chr2:34179557-34186145:-
Coord C1 exon
chr2:34186076-34186145
Coord A exon
chr2:34179987-34180030
Coord C2 exon
chr2:34179557-34179704
Length
44 bp
Sequences
Splice sites
3' ss Seq
ATAATAAATATGTTTTACAGCCT
3' ss Score
5.42
5' ss Seq
GATGTATCC
5' ss Score
1.64
Exon sequences
Seq C1 exon
GATGGTGAAGTGGATGCTGAAGAACTTCAGAAGTGTTTAACACAGTCTGGAATTAGTGGAACTTATTCTC
Seq A exon
CCTTCAGTTTGGAAACCTGCAGAATTATGATTGCCATGTTGGAT
Seq C2 exon
AGAGATTACTCAGGAAAAATGGGATTTAATGAATTCAAAGAACTTTGGGCAGCTCTTAACTCCTGGAAGCAAAACTTCATAACTGTTGATAAAGACGGAAGTGGCTCAGTAGAGCATCATGAACTGAATCAAGCCATTGCTGCTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018446-'3-6,'3-5,4-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(39.7=100)
A:
PF138331=EF-hand_8=FE(24.1=100)
C2:
PF138331=EF-hand_8=PD(31.0=36.0),PF134991=EF-hand_7=PU(48.3=58.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGAAGTGGATGCTGAAGA
R:
TCCAGGAGTTAAGAGCTGCCC
Band lengths:
135-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]