MmuEX0020169 @ mm10
Exon Skipping
Gene
ENSMUSG00000026893 | Gca
Description
grancalcin [Source:MGI Symbol;Acc:MGI:1918521]
Coordinates
chr2:62679156-62686424:+
Coord C1 exon
chr2:62679156-62679225
Coord A exon
chr2:62685965-62686008
Coord C2 exon
chr2:62686277-62686424
Length
44 bp
Sequences
Splice sites
3' ss Seq
ATGTCAAATATGTTTTACAGCTT
3' ss Score
6.52
5' ss Seq
GATGTATCC
5' ss Score
1.64
Exon sequences
Seq C1 exon
GATGGTGAGGTGGATGCTGAGGAACTGCAGAGATGCTTGACCCAGTCTGGAATTAGTGGAACTTACGCAC
Seq A exon
CTTTCAGTTTGGAAACCTGCAGAATTATGATTGCCATGTTGGAT
Seq C2 exon
AGAGACTACACAGGAAAAATGGGGTTCAACGAATTCAAGGAGCTTTGGGCCGCTCTTAATGCCTGGAAGCAGAACTTCATGACCATTGACCAAGATCAAAGTGGCACGGTAGAACATCATGAGCTGAGTCAAGCCATCGCTCTTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026893-'6-6,'6-4,8-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(39.7=100)
A:
PF138331=EF-hand_8=FE(24.1=100),PF0154011=Lipoprotein_7=PU(11.9=53.3)
C2:
PF138331=EF-hand_8=PD(31.0=36.0),PF0154011=Lipoprotein_7=FE(73.1=100)
Main Skipping Isoform:
ENSMUST00000028257fB10418
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGGTGGATGCTGAGGAAC
R:
TGCTTCCAGGCATTAAGAGCG
Band lengths:
137-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types