RnoEX6017089 @ rn6
Exon Skipping
Gene
ENSRNOG00000007359 | Gca
Description
grancalcin [Source:RGD Symbol;Acc:1306589]
Coordinates
chr3:48649036-48655161:+
Coord C1 exon
chr3:48649036-48649105
Coord A exon
chr3:48654707-48654750
Coord C2 exon
chr3:48655014-48655161
Length
44 bp
Sequences
Splice sites
3' ss Seq
ATATTGAATATGTCTTACAGCTT
3' ss Score
6.11
5' ss Seq
GATGTATCC
5' ss Score
1.64
Exon sequences
Seq C1 exon
GATGGTGAGGTGGATGCTGAAGAGCTGCAGAGATGCTTGACACAGTCTGGAATCAGTGGATCTTATGCTC
Seq A exon
CTTTCAGCTTGGAAACCTGCAGAATTATGATTGCCATGTTGGAT
Seq C2 exon
AGAGACTACACAGGAAAAATGGGATTCAACGAGTTCAAGGAGCTTTGGGCAGCTCTCAATGCCTGGAAGCAGAACTTCATGAGCATTGACCAGGATCAAAGTGGCACCGTAGAGCATCATGAGCTGAGTCAAGCCATCGCGCTCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007359-'7-5,'7-4,9-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(39.7=100)
A:
PF138331=EF-hand_8=FE(24.1=100)
C2:
PF138331=EF-hand_8=PD(31.0=36.0),PF134991=EF-hand_7=PU(48.3=58.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGGTGGATGCTGAAGAGC
R:
CTTCCAGGCATTGAGAGCTGC
Band lengths:
135-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]