MmuEX0020169 @ mm9
Exon Skipping
Gene
ENSMUSG00000026893 | Gca
Description
grancalcin [Source:MGI Symbol;Acc:MGI:1918521]
Coordinates
chr2:62517213-62524481:+
Coord C1 exon
chr2:62517213-62517282
Coord A exon
chr2:62524022-62524065
Coord C2 exon
chr2:62524334-62524481
Length
44 bp
Sequences
Splice sites
3' ss Seq
ATGTCAAATATGTTTTACAGCTT
3' ss Score
6.52
5' ss Seq
GATGTATCC
5' ss Score
1.64
Exon sequences
Seq C1 exon
GATGGTGAGGTGGATGCTGAGGAACTGCAGAGATGCTTGACCCAGTCTGGAATTAGTGGAACTTACGCAC
Seq A exon
CTTTCAGTTTGGAAACCTGCAGAATTATGATTGCCATGTTGGAT
Seq C2 exon
AGAGACTACACAGGAAAAATGGGGTTCAACGAATTCAAGGAGCTTTGGGCCGCTCTTAATGCCTGGAAGCAGAACTTCATGACCATTGACCAAGATCAAAGTGGCACGGTAGAACATCATGAGCTGAGTCAAGCCATCGCTCTTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026893-'2-4,'2-2,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(39.7=100)
A:
PF138331=EF-hand_8=FE(24.1=100),PF0154011=Lipoprotein_7=PU(7.0=40.0)
C2:
PF138331=EF-hand_8=PD(31.0=36.0),PF0154011=Lipoprotein_7=FE(57.0=100),PF134991=EF-hand_7=PU(48.3=58.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGGTGGATGCTGAGGAAC
R:
TGCTTCCAGGCATTAAGAGCG
Band lengths:
137-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: