HsaEX6016297 @ hg19
Exon Skipping
Gene
ENSG00000115271 | GCA
Description
grancalcin, EF-hand calcium binding protein [Source:HGNC Symbol;Acc:15990]
Coordinates
chr2:163208848-163213344:+
Coord C1 exon
chr2:163208848-163208917
Coord A exon
chr2:163212948-163212991
Coord C2 exon
chr2:163213268-163213344
Length
44 bp
Sequences
Splice sites
3' ss Seq
ATATTGAATATGTTTTACAGCCT
3' ss Score
5
5' ss Seq
GATGTATCC
5' ss Score
1.64
Exon sequences
Seq C1 exon
GATGGTGAAGTGGATGCTGAAGAACTTCAGAGATGTTTGACACAGTCTGGAATTAATGGAACTTACTCTC
Seq A exon
CCTTCAGTTTGGAAACCTGCAGAATTATGATTGCCATGTTGGAT
Seq C2 exon
AGAGATCACACAGGAAAAATGGGATTTAATGCATTCAAAGAGCTATGGGCAGCTCTTAATGCCTGGAAGGAAAACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115271-'10-13,'10-12,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.000 C2=0.007
Domain overlap (PFAM):
C1:
PF111973=DUF2835=FE(40.4=100),PF138331=EF-hand_8=FE(53.5=100)
A:
PF111973=DUF2835=PD(10.5=40.0),PF138331=EF-hand_8=FE(32.6=100)
C2:
PF138331=EF-hand_8=PD(31.0=36.0),PF134991=EF-hand_7=PU(48.3=58.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGAAGTGGATGCTGAAGA
R:
CCTTCCAGGCATTAAGAGCTGC
Band lengths:
138-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)